2015 Publications

Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Shim-Angeles RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M (2015) Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci. G3 5 (11): 2267-74. DOI: 10.1534/g3.115.020834

Gould B, McCouch S, Geber M (2015) De novo transcriptome assembly and identification of gene candidates for rapid evolution of soil Al tolerance in Anthoxanthum odoratum at the long-term Park Grass Experiment. PLoS ONE: PONE-D-14-44722R2

Hua L, Wang DR, Tan L, Fu Y, Liu F, Xiao L, Zhu Z, Fu Q, Sun X, Gu P, Cai H, McCouch SR, Sun C (2015) LABA1, a domestication gene associated with long, barbed awns in wild rice.  Plant Cell 27(7):1875-88. DOI: 10.1105/tpc.15.00260

Yan J, Aboshi T, Teraishi M, Strickler SR, Spindel JE, Tung CW, Takata R, Matsumoto F, Maesaka Y, McCouch SR, Okumoto Y, Mori N, Jander G (2015) The Tyrosine Aminomutase TAM1 Is Required for β-Tyrosine Biosynthesis in Rice. Plant Cell 27(4):1265-78. DOI: 10.1105/tpc.15.00058

Begum H, Spindel J, Lalusin A, Borromeo T, Gregorio G, Hernandez J, Virk P, Collard B, McCouch SR (2015) Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa). PLoS ONE:10(3): e0119873. DOI: 10.1371/journal.pone.0119873

Arbalaez JD, Moreno LT, Singh N, Tung C, Maron LG, Ospina Y, Martinez, CP, Grenier C, Lorieux M, McCouch S (2015) Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Mol Breeding 35(81) DOI 10.1007/s11032-015-0276-7.

Spindel J, Begum H, Akdemir D, Virk P, Collard B, Redoña E, Atlin G, Jannink JL, McCouch SR (2015) Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines. PLOS Genetics, DOI: 10.1371/journal.pgen.1004982.

Jane Alfred, Jeffery L. Dangl, Sophien Kamoun, Susan R. McCouch, (2015) New Horizons for Plant Translational Research. PLoS Biol 12(6): e1001880, 2014 June 10, doi:10.1371/journal.pbio.1001880

Pariasca-Tanaka J, Lorieux M, He C, McCouch S, Thomson M.J., Wissuwa M (2014) Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses. Euphytica 201(1) 67-78. DOI: 10.1007/s10681-014-1183-4