2014 Publications

Schatz MC, Maron LG, Stein JC, Hernandez Wences A, Gurtowski J, Biggers E, Lee H, Kramer M, Antoniou E, Ghiban E, Wright MH, Chia JM, Ware D, McCouch SR, McCombie WR. (2014) Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol. 2014;15(11):506.

Gould B, McCouch S, Geber M. (2014) Variation in soil aluminum tolerance genes is associated with local adaptation to soils at the Park Grass ExperimentMol Ecol. 2014 Aug 21. doi: 10.1111/mec.12893. 

HyunJung Kim, Eung Gi Jeong, Sang-Nag Ahn, Jeffrey Doyle, Namrata Singh, Anthony J Greenberg, Yong Jae Won and Susan R McCouch. (2014) Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people’s republic of Korea (DPRK; North Korea). Rice 2014, 7:7, 2014 July 2, doi:10.1186/s12284-014-0007-4

Rajeev K. Varshney, Ryohei Terauchi, Susan R. McCouch. (2014) Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding. PLoS Biol 12(6): e1001883, 2014 June 10, doi:10.1371/journal.pbio.1001883

Li JY, Liu J, Dong D, Jia X, McCouch SR, Kochian LV. (2014) Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance. Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6503-6508. Epub 2014 Apr 11.

Cardoso C, Zhang Y, Jamil M, Hepworth J, Charnikhova T, Dimkpa SO, Meharg C, Wright MH, Liu J, Meng X, Wang Y, Li J, McCouch SR, Leyser O, Price AH, Bouwmeester HJ, Ruyter-Spira C. (2014) Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs. Proc Natl Acad Sci U S A. 2014 Jan 24. [Epub ahead of print]

Crowell S, Falcão AX, Shah A, Wilson Z, Greenberg AJ, McCouch SR (2014) High-Resolution Inflorescence Phenotyping Using a Novel Image Analysis Pipeline, PANorama. Plant Physiology April 2014 pp.114.238626. [Epub ahead of print]. How-To videos for using PANorama

Ogawa S, Selvaraj M, Fernando AJ, Lorieux M, Ishitani M, McCouch S, Arbelaez JD (2014) N- and P- mediated seminal root elongation response in rice seedlings. Plant and Soil 375(1-2):303-315 doi:10.1007/s11104-013-1944-7