2013 Publications

Eizenga GC, Ali ML, Bryant RJ, Yeater KM, McClung AM, McCouch SR (2013) Registration of the ‘Rice Diversity Panel I’ for genome-wide association studies. J. Pla­­­nt Reg. 8(1):109-116. DOI: 10.3198/jpr2013.03.0013crmp

Bandillo N, Raghavan C, Muyco PA, Sevilla MA, Lobina IT, Dilla-Ermita CJ, Tung CW, McCouch S, Thomson M, Mauleon R, Singh RK, Gregorio G, Redoña E, Leung H. (2013) Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice (N Y). 2013;6(1):11

Spindel J, Wright M, Chen C, Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S. (2013). Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor Appl Genet., Volume 126, Issue 11, pp 2699-2716. [Pubmed abstract]. Download data sets and software.

McCouch S, Baute GJ, Bradeen J, Bramel P, Bretting PK, Buckler E, Burke JM, Charest D, Cloutier S, Cole G, Dempewolf H, Dingkuhn M, Feuillet C, Gepts P, Grattapaglia D, Guarino L, Jackson S, Knapp S, Langridge P, Lawton-Rauh A, Lijua Q, Lusty C, Michael T, Myles S, Naito K, Nelson RL, Pontarollo R, Richards CM, Rieseberg L, Ross-Ibarra J, Rounsley S, Hamilton RS, Schurr U, Stein N, Tomooka N, van der Knaap E, van Tassel D, Toll J, Valls J, Varshney RK, Ward J, Waugh R, Wenzl P, Zamir D (2013a) Agriculture: Feeding the future. Nature 499 (7456):23-24. doi:10.1038/499023a. [Pubmed abstract]

Jung J, McCouch SR (2013) Getting to the roots of it: Genetic and hormonal control of root architecture.   Front. Plant Sci., 18 June 2013 | doi: 10.3389/fpls.2013.00186

Dharmawardhana P, Ren L, Amarasinghe V, Monaco M, Thomason J, Ravenscroft D, McCouch S, Ware D, Jaiswal P (2013) A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice 6:15 doi:10.1186/1939-8433-6-15

Eizenga GC, Ali ML, Bryant RJ, Yeater KM, McClung AM, McCouch SR (2013) Registration of the ‘Rice Diversity Panel I’ for genome-wide association studies. Journal of Plant Registrations 8:109–116 (2014). doi: 10.3198/jpr2013.03.0013crmp

Noriko Takano-Kai, Hui Jiang2, Adrian Powell, Susan McCouch, Itsuro Takamure, Naruto Furuya1), Kazuyuki Doi1,and Atsushi Yoshimura (2013) Multiple and independent origins of short seeded alleles of GS3 in rice. Breeding Science, 63: 77–85, April 15. doi:10.1270/jsbbs.63.77

Cobb J, DeClerck G, Greenberg A, Clark R, McCouch SR (2013) Next generation phenotyping: Requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. Theor Appl Genet, , Volume 126, Issue 4, pp 867-887. doi:10.1007/s00122-013-2066-0 (Full PDF)

Imai I, Kimball JA, Conway B, Yeater KM, McCouch S, McClung A (2013). Validation for yield enhancing QTLs form a low-yielding wild ancestor of rice. Molecular Breeding 2013 32:101-120. doi: 10.1007/s11032-013-9855-7.

Clark RT, Famoso AN, Zhao K, Shaff JE, Craft EJ, Bustamante CD, McCouch SR, Aneshansley DJ, Kochian LV (2013) High-throughput 2D root system phenotyping platform facilitates genetic analysis of root growth and development. Plant, Cell and Environment 36(2):454-466. doi: 10.1111/j.1365-3040.2012.02587.x.