2012 Publications

Chen C, DeClerck G, Tian F, Spooner W, McCouch S, et al. (2012) PICARA, an Analytical Pipeline Providing Probabilistic Inference about A Priori Candidates Genes Underlying Genome-Wide Association QTL in Plants. PLoS ONE 7(11): e46596. doi:10.1371/journal.pone.0046596
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Clark RT, Famoso AN,  Zhao K, Shaff JE, Craft JE, Bustamante CD, McCouch SR, Aneshansley DJ, Kochian LV. (2012). High-throughput 2D root system phenotyping platform facilitates genetic analysis of root growth and development. Plant Cell Environment.  doi: 10.1111/j.1365-3040.2012.02587.x.
McCouch SR, McNally KL, Wang W, Sackville Hamilton R. (2012) Genomics of gene banks: A case study in rice. American Journal of Botany. 2012 Feb;99(2):407-23. Epub 2012 Feb 6. (Full PDF)
Rice WRKY Working Group, Qingxi J Shen, Diqui Yu, Jong-Seong Jeon, Pietro Piffanelli, Pamela Abbruscato, Ze-Jian Guo, Yuanji Zhang, Takeshi Itoh, Sung Shin Lee, Robin C Buell, Yasuo Nagato, Susan McCouch, Masahiro Yano, Guo-liang Wang, Kshirod Kumar Jena, Lizhong Xiong, Blake Meyers, Pankaj Jaiswal and Yukiko Yamazaki. (2012) Nomenclature report on rice WRKY's - Conflict regarding gene names and its solution. Rice, 2012, 5:3, doi:10.1186/1939-8433-5-3
Michael J. Thomson, Keyan Zhao, Mark Wright, Kenneth L. McNally, Jessica Rey, Chih-Wei Tung, Andy Reynolds, Brian Scheffler, Georgia Eizenga Anna McClung, Hyunjung Kim, Abdelbagi M. Ismail, Marjorie de Ocampo, Chromewell Mojica, Ma. Ymber Reveche, Christine J. Dilla-Ermita, Ramil Mauleon, Hei Leung, Carlos Bustamante, Susan R. McCouch (2012) High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Mol Breeding. Volume 29, Number 4 (2012), 875-886, DOI: 10.1007/s11032-011-9663-x. Data sets for this study are accessable from the Rice Diversity website here.
Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W (2012) Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology 30:101-111 doi:10.1038/nbt.2050 This was submitted in 2011, it is cited as 2012

McCouch, Susan R, Kovach Michael J, Sweeney M, Jiang H, Semon M (2012) The Dynamics of Rice Domestication: A Balance between Gene Flow and Genetic Isolation. Chapter 13, pp. 311-329 IN: Gepts P, Famula TR, Bettinger RL (eds), Biodiversity in Agriculture: Domestication, Evolution and Sustainability. Cambridge University Press.