2010 Publications

Ji H, Kim S-R, Kim Y-H, Kim H, Eun M-Y, Jin I-D, Cha Y-s, Yun D-W, Ahn B-O, Lee MC, Lee G-S, Yoon U-H, Lee J-S, Lee Y-h, Suh S-C, Wenzhu J, Yang J-I, Jin P, McCouch S, An G, Koh H-J (2010). Inactivation of the CTD phosphatase-like gene OSCPL1 enhances development of the abscission layer and seed shattering in rice. The Plant Journal, 61:1:96-106, Jan 2010. (Published online: 5 Nov 2009 )

Yong-Gu Cho, Hyeon-Jung Kang, Young-Tae Lee, Seung-Keun Jong, Moo-Young Eun and Susan R. McCouch. (2010) Identification of quantitative trait loci for physical and chemical properties of rice grain. Korean Society for Plant Biotechnology, Volume 4, Number 1, Jan 2010, pp.61-73.

Orjuela J, Garavito A, Bounilo M, Arbelaez JD, Moreno L, Kimball J, Wilson G, Rami J-F, Tohme J, McCouch S, Lorieux M (2010). A universal core genetic map for rice. Theor Appl Genet, Volume 120, Number 3, pp.563-572, February 2010. (Published online: 22 October 2009). doi: 10.1007/s00122-009-1176-1

Maas LF, McClung A, McCouch S (2010). Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice. Theor Appl Genet., 120(5):895-908, March 2010.

Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR (2010). Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome. PLoS One. 2010; 5(5): e10780. Published online 2010 May 24. doi: 10.1371/journal.pone.0010780

Famoso AN, Clark RT, Shaff JE, Craft E, McCouch SR, Kochian LV (2010). Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal Al tolerance and investigations into rice Al tolerance mechanisms. Plant Physiology 153:1678-1691, June 2010.

Asante M, Kovach M, Huan L, Harrington S, Dartey P, Akromah R, Semon M, McCouch SR (2010). The genetic origin of fragrance in NERICA1. Molecular Breeding 26(3) 419-424, Oct 2010.

Wright MH, Tung CW, Zhao K, Reynolds A, McCouch SR, Bustamante CD (2010). ALCHEMY: A Reliable Method for Automated SNP Genotype Calling for Small Batch Sizes and Highly Homozygous Populations. Bioinformatics. First published online: October 5, 2010. doi: 10.1093/bioinformatics/btq533

McCouch S, Tung C-W, Zhao K, Wright M, Kimball J, Reynolds A, Tyagi W, Wang D, DeClerck G, McClung A, Bustamante C (2010) Development of genome-wide SNP assays for rice.. Breeding Science 60(5) 524-535, Dec 2010. (Full PDF)

Tung CW, Zhao K, Wright MH, Ali ML, Jung J, Kimball J, Tyagi W, Thomson M, McNally K, Leung H, Kim H, Ahn SN, Reynolds A, Scheffler B, Eizenga G, McClung A, Bustamante C McCouch SR (2010) Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Rice 3(1) 205-217, Dec 2010.

This D, Comstock J, Courtois B, Xu Y, Ahmadi N, Vonhof W, Fleet C, Setter T, McCouch SR (2010). Genetic analysis of water-use efficiency in rice (Oryza sativa L.) at the leaf-level. Rice 3(1):72-86