2007 Publications

Kovach M, Sweeney M, McCouch S (2007) New insights into the history of rice domestication. Trends Genet 23:579-587

Semagn K, Ndjiondjop MN, Lorieux M, Cissoko M, Jones M, McCouch S (2007). Molecular profiling of an interspecific rice population derived from a cross between WAB 56-104 (Oryza sativa) and CG 14 (Oryza glaberrima). Afr J Biotech 6: 2014-2022. (Full PDF)

Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD (2007) Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. PLoS Genetics 3:e163 (Full PDF)

Iyer-Pascuzzi A and McCouch S (2007) Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. MPMI 20: 731-739 (Full PDF)

Sweeney M, Thomson MJ, Cho Y-G, Park Y-J, Williamson S, Bustamante CD, McCouch SR (2007) Global dissemination of a single mutation conferring white pericarp in rice. PloS Genet: doi: 10.1371/journal.pgen.0030133 / 2007 August; 3(8): e133 (Full PDF)

Sweeney M and McCouch S (2007) The complex history of the domestication of rice. Ann Bot: doi 10.1093/aob/mcm128 (Full PDF)

Iyer-Pascuzzi AS and McCouch SR (2007) Functional markers for xa5-mediated resistance in rice. Mol Breed 19:291-296

Cho Y-I, Jiang W, Chin J-H, Piao Z, Cho YG, McCouch SR, Koh H-J (2007) Identification of QTLs associated with physiological nitrogen use efficiency in rice. Molecules and Cells 23: 72-79

Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch SR, Purugganan MD (2007) The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics 177: 2223-2232 (Full PDF)

McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septinginsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, Yuan L P, Ahn SN (2007) Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. Euphytica, 154: 317-339

Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, Rhee SY, (2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol. 143: 587-599 (Full PDF)

Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR. (2007) Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor. Appl. Genet. 114: 559-568

Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI (2007) Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. PloS Genet. 2006 Nov 17; 2(11):e199 (Full PDF)

Cho YG, Kang HJ, See JS, Lee YT, Lim SJ, Gaugh H, Eun MY and McCouch SR (2007) Identification of quantitative trait loci in rice for yield, yield components, and agronomic traits across years and locations. Crop Science 47(6):2403-2417

Book Sections:

Iyer-Pascuzzi A, Sweeney M, Sarla N, McCouch SR (2007) Use of naturally occurring alleles for crop improvement. In: Upadhyaya NM, ed. Rice Functional Genomics: Challenges, Progress and Prospects, pps 107-147

Edwards J, McCouch S (2007) Molecular markers for use in plant molecular breeding and germplasm evaluation. In: Guimaraes E, Ruane J, Scherf B, Sonnino A, Dargie J (eds) Marker-Assisted Selection: Current status and future perspectives in crops, livestock, forestry and fish. FAO, Rome, pp 29-49

Proceedings:

McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Moncada P, Xiao J, Coburn J, Fraker E, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, Yuan LP, Ahn S-N (2005) Identification and transfer of trait-enhancing alleles from wild species. In: Brar DS, Mackill DJ, Hardy B (eds) Rice Genetics V: Proceedings of the Fifth International Rice Genetics Symposium, 19-23 November 2005. World Scientific Publishing and International Rice Research Institute, Manila, Philippines, pp 209-232 (not available online)