2006 Publications

Olsen KM, Caicedo AL, Polato N, McClung A, McCouch SR (2006) Selection under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region. Genetics 173:975-983 (Full PDF)

Pujar A, Jaiswal P, Kellogg E, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee S, Sachs M, Schaeffer M, Stein L, Ware D, McCouch S (2006) Whole Plant Growth Stage Ontology for Angiosperms and its Application in Plant Biology. Plant Physiol. 142: 414-428. Published on August 11, 2006; 10.1104/pp.106.085720 (Full PDF)

Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang HG, McCouch SR (2006) Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. Theor Appl Genet 113: 885-894

Ji, H-S, Chu, S-H, Jiang, W, Cho, Y-I, Hahn, J-H, Eun, M-Y, McCouch, S, Koh, H-J (2006) Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes. Genetics 173: 995-1005 (Full PDF)

Thomson M, Edwards J, Septiningsih E, Harrington S, McCouch S (2006) Substitution mapping of dth1.1, a flowering time QTL associated with transgressive variation in rice, reveals a cluster of QTLs. Genetics 172: 2501-2514 (Full PDF)

Ammiraju J, Luo M, Goicoechea J, Want W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros N, Blackmon B, Fang E, Tomkins J, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith D, Arumuganathan K, Rao K, Walling J, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing R (2006) The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research 16: 140-147 (Full PDF)

Sweeney M, Thomson M, Pfeil B, McCouch S (2006) Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice. Plant Cell 18:283-294 (Full PDF)

Jaiswal P, Avaraham S, Ilic K, Kellogg E, McCouch S, Pujar A, Reiser L, Rhee S, Sachs M, Schaeffer M, Stein L, Stevens P, Leszek V, Ware D, Zapata F (2006) Plant Ontology (PO): A controlled vocabulary of plant structures and growth stages. Comp Func Gen 6: 388-397 (Full PDF)

Jaiswal P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K, Faga B, Canaran P, Fogleman M, Hebbard C, Avraham S, Schmidt S, Casstevens T, Buckler E, Stein L, McCouch S (2006) Gramene: A bird's eye view. Nucleic Acids Research 34: D717-D723; doi: 10.1093/nar/gkj154 (Full PDF)