2000-1996 Publications


Temnykh S, W D Park, N Ayres, S Cartinhour, N Hauck, L Lipovich, YG Cho, T Ishii , SR McCouch (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa. L). Theor Appl Genet 100:697-712

Cho YG, T Ishii, S Temnykh, X Chen, L Lipovich, SR McCouch (2000) Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theor Appl Genet 100:713-722

Maheswaran M, N Huang, SR Sreerangasamy and SR McCouch (2000) Mapping quantitative trait loci associated with days to flowering and photoperiod sensitivity in rice (Oryza sativa, L.). Mol Breed 6:145-155

Ishii T and SR McCouch (2000) Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theor Appl Genet 100:1257-1266


Blair MW, O Panaud and SR McCouch (1999) Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite frequency and fingerprinting in rice (Oryza sativa L.). Theor Appl Genet 98:780-792

Huq E, S Harrington, MA Hossain, F Wen, SR McCouch, and TK Hodges (1999) Molecular characterization of the pdc2 gene and mapping of three pdc genes from rice. Theor Appl Genet 98:815-824

Xue Q, K Edoh, H Li, N Zhang, J Yan, SR McCouch, E Earle (1999) Production and testing of plants regenerated from protoplasts of photoperiod sensitive genetic male sterile rice (Oryza sativa L.). Euphytica 205:167-172

Koh HJ, YH Son, MH Heu, HS Lee, SR McCouch (1999) Molecular mapping of a new genic male-sterility gene causing chalky endosperm in rice (Oryza sativa L.). Euphytica 106:57-62

Wilson WA, SE Harrington, WL Woodman, M Lee, ME Sorrells, SR McCouch (1999) Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize, and the domesticated panicoids. Genetics 153:453-473 (Full PDF)


McCouch SR (1998) Toward a plant genomics initiative: Thoughts on the value of cross-species and cross-genera comparisons in the grasses PNAS 95:1983-1985 (Full PDF)

VanDeynze AE, ME Sorrells, WD Park, NM Ayres, HY Fu, SW Cartinhour, E Paul and SR McCouch (1998) Anchor Probes for comparative mapping of grass genera. Theor Appl Genet 97:356-369

Cho YG, SR McCouch, M Kuiper, MR Kang, J Pot, JTM Groenen and MY Eun (1998) Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor Appl Genet 97:370-380

Xiao J, Li J, Grandillo S, Ahn, S, Yuan L, Tanksley S, McCouch S (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150: 899-909 (Full PDF)

Xu Y, SR McCouch and Z Shen. (1998) Transgressive segregation of tiller angle caused by complementary action of genes in crosses between indica varieties of rice (Oryza sativa L.). Crop Sci 38:12-19


Xu Y, Zhu L, Xiao J, Huang N, McCouch S (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet 253: 535-545

Meijer AH, Scarpella E, van Dijk EL, Qin L, Taal AJC, Rueb S, Harrington SE, McCouch SR, Schilperoort RA, Hoge JHC (1997) Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice. Plant J. 1997 Feb;11(2):263-76 (Full PDF)

McCouch SR, X Chen, O Panaud, S Temnykh, Y Xu, YG Cho, N Huang, T Ishii and M Blair (1997) Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Mol Biol. 1997 Sep;35(1-2):89-99

Blair MW and SR McCouch (1997) Microsatellite and sequence tagged site markers diagnostic for the bacterial blight resistance gene, xa-5. Theor Appl Genet 95:174-184

Harrington S, F Bligh, C Jones, W Park and SR McCouch (1997) Linkage mapping of the starch branching enzyme III (SBEIII) in rice (Oryza sativa L.) and related cereals. Theor Appl Genet 94:564-568

Olufowote JO, Y Xu, X Chen, WD Park, HM Beachell, RH Dilday, M Goto, and SR McCouch (1997) Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome 40:370-378

Huang N, A Parco, T Mew, G Magpantay, SR McCouch, E Guiderdoni J Xu, P Subudhi, R Angeles, and GS Khush (1997) RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population. Mol Breeding 3:105-113

Ghesquiere A, L Albar, M Lorieux, N Ahmadi, D Fargette, N Huang, SR McCouch and JL Notteghem (1997) A major QTL for rice yellow mottle virus (RYMV) resistance is lying in a cluster of blast resistance genes on chromosome 12. Phytopathology 87:1243-1249. [PDF]

Chen X, S Temnykh, Y Xu, YG Cho and SR McCouch (1997) Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.) Theor Appl Genet 95:553-567

Tanksley SD and SR McCouch (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063-1066.


Cho YG, MW Blair, O. Panaud and SR McCouch (1996) Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphisms (AFLP) from silver stained polyacrylamide gels. Genome 39:373-378. N/A as a download from Publisher's website

Yu ZH, DJ Mackill, JM Bonman, SR McCouch, E Guiderdoni, JL Notteghem, and SD Tanksley (1996) Molecular mapping of genes for resistance to rice blast (Pyricularia grisea Sacc.) Theor Appl Genet 93:859-863. Only available from Publisher's website by paying a fee (even through Cornell)

Xiao J, J Li, LP Yuan, SR McCouch and SD Tanksley (1996). Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR-based markers. Theor Appl Genet 92:637-643

Panaud O, X Chen and SR McCouch (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252:597-607

Xiao J, J Li, S Grandillo, SN Ahn, SR McCouch, SD Tanksley, L Yuan (1996) Wild rice genes boost yields of rice. Nature 384:223-224 {Full PDF)