PUBLICATIONS*

2006-2005

2006

Olsen KM, Caicedo AL, Polato N, McClung A, McCouch SR (2006) Selection under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region. Genetics 173:975-983 LINK

Pujar A, Jaiswal P, Kellogg E, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee S, Sachs M, Schaeffer M, Stein L, Ware D, McCouch S (2006) Whole Plant Growth Stage Ontology for Angiosperms and its Application in Plant Biology. Plant Physiol. 142: 414-428. Published on August 11, 2006; 10.1104/pp.106.085720 LINK

Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang HG, McCouch SR (2006) Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon. Theor Appl Genet 113: 885-894 LINK

Ji, H-S, Chu, S-H, Jiang, W, Cho, Y-I, Hahn, J-H, Eun, M-Y, McCouch, S, Koh, H-J (2006) Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes.  Genetics 173: 995-1005 LINK

Thomson M, Edwards J, Septiningsih E, Harrington S, McCouch S (2006) Substitution mapping of dth1.1, a flowering time QTL associated with transgressive variation in rice, reveals a cluster of QTLs.  Genetics 172: 2501-2514 LINK

Ammiraju J, Luo M, Goicoechea J, Want W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros N, Blackmon B, Fang E, Tomkins J, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith D, Arumuganathan K, Rao K, Walling J, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing R (2006) The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research 16: 140-147 LINK

Sweeney M, Thomson M, Pfeil B, McCouch S (2006) Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice. Plant Cell 18:283-294 LINK

Jaiswal P, Avaraham S, Ilic K, Kellogg E, McCouch S, Pujar A, Reiser L, Rhee S, Sachs M, Schaeffer M, Stein L, Stevens P, Leszek V, Ware D, Zapata F (2006) Plant Ontology (PO): A controlled vocabulary of plant structures and growth stages. Comp Func Gen 6: 388-397 LINK

Jaiswal P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K, Faga B, Canaran P, Fogleman M, Hebbard C, Avraham S, Schmidt S, Casstevens T, Buckler E, Stein L, McCouch S (2006) Gramene: A bird’s eye view. Nucleic Acids Research 34: D717-D723; doi: 10.1093/nar/gkj154 LINK

2005
Comstock J, McCouch S, Martin B, Tauer C, Vision T, Xu Y, Pausch R (2005) The effects of resource availability and environmental conditions on genetic ranking for carbon isotope discrimination during growth in tomato and rice. Func Pl Biol 32: 1089-1105 LINK

Xu Y, McCouch S, Zhang Q (2005) How can we use genomics to improve cereals with rice as a reference genome? Pl Mol Biol 59: 7-26 LINK

International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800 LINK

Zhang N, Xu Y, Akash M, McCouch S, Oard J (2005) Identification of candidate markers associated with agronomic traits in rice using discriminant analysis. Theor Appl Genet 110: 721-729 LINK

Lee S-J, Oh C-S, Suh J-P, McCouch, S R, Ahn S-N (2005) Identification of QTLs for domesticaiton-related and agronomic traits in an Oryza sativa x O. rufipogon BC1F7 population. Pl Breed 124: 209-219 LINK

Lu H, Redus M, Coburn J, Rutger N, McCouch S, Tai T (2005) Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis.  Crop Sci 45: 66-76 LINK

Garris A, Tai T, Coburn J, Kresovich S, McCouch S (2005) Genetic structure and diversity in Oryza sativa L.  Genetics: 169: 1631-1658 LINK

Semon M, Nielsen R, Jones M, McCouch S (2005) The population structure of African cultivated rice Oryza Glaberrima (Steud.): evidence for elevated levels of LD caused by admixture with O. sativa and ecological adaptation. Genetics: 169: 1639-1647 LINK

*Reprints on this list that do not download can be requested from Dr. McCouch by contacting Lois Swales.

NOTE:
“LINK” is arranged so that Cornell researchers can access the article from both inside and outside Cornell .

If you do not have a Cornell ID, a second download location named “URL” is provided that goes directly to the journal website.  In some cases you will be unable to download the article if your institution doesn’t have the required membership for that journal.