Links of Interest
- Rice Diversity - McCouch RiceLab project. Garris figure | Seed images
- Rice SNP Consortium - McCouch RiceLab project
- Rice Production Course at IRRI - McCouch RiceLab project
- Gramene Database - genome viewing, genetic and physical maps, comparative maps, QTL, markers, protein structure and function, biopathways, genetic diversity, SSRIT (SSR Identification Tool) - McCouch RiceLab project
- OryzaSNP Consortium
- International Rice Functional Genomics Consortium
- PLACE - A database for Plant Cis-Acting Regulating DNA Elements
- KOME (Knowledge Based Oryza Molecular biological Encyclopedia) - Provides information on 32,127 full-length cDNA clones from japonica rice.
- Oryzabase database - National Institute of Genetics in Japan
- Cereal Knowledge Bank - IRRI/CIMMYT resource
- Wikipedia: Rice, Plant Breeding, SNP
Bioinformatics tools
- GBS adaptor designer - Tool created by Deena Bioinfomatics
- CHARM - Rice marker community portal. McCouch RiceLab project
- Primer3 - primer design tool
- NEBcutter V2.0 - DNA sequence tool to find large, non-overlapping, open reading frames and sites for all restriction enzymes
- CSSL Finder - Program for managing introgression lines
- EMBOSS - EMBOSS suite of bioinformatics tools hosted by Purdue
- Galaxy - Bioinformatics workbench
- Scriptome - Toolbox helping biologists explore and manipulate their data
- PLINK- Whole genome association analysis toolset
- Flapjack - Genotype and haplotype visualization
Germplasm resources
- GRIN (Germplasm Resources Information Network)
- NSGC (National Small Grains Collection) - Oryza sativa accessions
- GSOR Collection at Dale Bumpers National Rice Research Center
- IRIS (International Rice Information System)
- Rice Genome Resource Center - Provides access to the following biological rice insertion mutant lines (Tos17), materials for genetic analysis, full-length cDNA clones
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