PUBLICATIONS*

2004-2003

2004
Cho, YI, Park CW, Kwon, SW, Chin JH, Ji, HS, Park KJ, McCouch S, Koh, HJ (2004) Key DNA markers for predicting heterosis in F1 hybrids of japonica rice. Breed Sci 54: 389-397  LINK

Fraker E, Li J, McCouch S (2004) SSR Mapping of Minute, a major gene for grain size, on rice chromosome 3. Rice Genet Newsl 21: 21-23 LINK

Li J, Thomson M, McCouch S (2004) Fine mapping of a grain weight QTL in the peri-centromeric region of rice chromosome 3. Genetics 168: 2187-2195 LINK

McCouch S (2004) Diversifying Selection in Plant Breeding. PLoS Biol 2(10): e347 (DOI: 10.1371/journal.pbio.0020347) LINK

Iyer A and McCouch S (2004) The rice disease resistance gene xa5 encodes a novel form of disease resistance. MPMI 17: 1348–1354 LINK

Li J, Xiao J, Grandillo S, Jiang L, Wan Y, Deng Q, Yuan L, McCouch S (2004) QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome 47: 697-704 LINK

Jain S, Jain R, McCouch S (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet: 109: 965–977 (DOI: 10.1007/s00122-004-1700-2) LINK

Edwards J, Lee VM, McCouch SR (2004) Sources and predictors of detectable indel polymorphism using rice as a model.  Mol Gen Genomics 271: 298-307 LINK

Moncada P and McCouch S (2004) Simple Sequence Repeat (SSR) diversity in diploid and tetraploid Coffea species.  Genome 47: 501-509 LINK

Xu Y, Beachell H, McCouch SR (2004) A marker-based approach to broadening the genetic base of rice (Oryza sativa L.) in the U.S. Crop Science 44: 1947–1959 LINK

Xu, Y, McCouch SR, Zhang Q (2004) How can we use genomics to improve cereals with rice as a reference genome? Pl Mol Biol 59: 7-26 LINK

2003
Yap I, Cartinhour S, Kleinberg J, Matthews D, Schneider D, McCouch S (2003) A graph-theoretic approach to integrating genetic linkage maps. Genetics 165: 2235–2247 LINK

Garris A, McCouch S, Kresovich S (2003) Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165: 759-769 LINK

Septiningsih E, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S, McCouch SR (2003a) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon  Theor Appl Genet 107:1419-1432 LINK

Septiningsih E, Trijatmiko KR, Moeljopawiro S, McCouch SR (2003b) Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O.rufipogon.  Theor Appl Genet 107:1433-1441 LINK

Thomson M, Tai T, McClung A, Xai X-H, Hinga M, Lobos K, Xu Y, Martinez P, McCouch S (2003) Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet 107:479–493 DOI 10.1007_s00122-003-1270-8 LINK

Blair M, Garris A, Iyer A, Chapman B, Kresovich S, McCouch S (2003) High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice (Oryza sativa L.). Theor Appl Genet 107:62–73 LINK

*Reprints on this list that do not download can be requested from Dr. McCouch by contacting Lois Swales.

NOTE:
“LINK” is arranged so that Cornell researchers can access the article from both inside and outside Cornell .