PUBLICATIONS*

2007 Download MS Word version

Kovach M, Sweeney M, McCouch S (2007) New insights into the history of rice domestication. Trends Genet 23:579-587 LINK URL

Semagn K, Ndjiondjop MN, Lorieux M, Cissoko M, Jones M, McCouch S (2007) Molecular profiling of an interspecific rice population derived from a cross between WAB 56-104 (Oryza sativa) and CG 14 (Oryza glaberrima). Afr J Biotech 6: 2014-2022 PDF

Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD (2007) Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice. PLoS Genetics 3:e163 LINK URL

Iyer-Pascuzzi A and McCouch S (2007) Recessive resistance genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae pathosystem. MPMI 20: 731-739 LINK

Sweeney M, Thomson MJ, Cho Y-G, Park Y-J, Williamson S, Bustamante CD, McCouch SR (2007) Global dissemination of a single mutation conferring white pericarp in rice. PloS Genet: doi: 10.1371/journal.pgen.0030133 / 2007 August; 3(8): e133 LINK URL

Sweeney M and McCouch S (2007) The complex history of the domestication of rice.  Ann Bot: doi 10.1093/aob/mcm128 LINK

Iyer-Pascuzzi AS and McCouch SR (2007) Functional markers for xa5-mediated resistance in rice. Mol Breed 19:291-296 LINK

Cho Y-I, Jiang W, Chin J-H, Piao Z, Cho YG, McCouch SR, Koh H-J (2007) Identification of QTLs associated with physiological nitrogen use efficiency in rice. Molecules and Cells 23: 72-79 LINK

Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch SR, Purugganan MD (2007) The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics 177: 2223-2232

McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septinginsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, Yuan L P, Ahn SN (2007) Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. Euphytica, 154: 317-339 LINK

Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, Rhee SY, (2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol. 143: 587-599 http://www.plantphysiol.org/cgi/content/abstract/143/2/587

Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR. (2007) Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.Theor. Appl. Genet. 114: 559-568 LINK

Tang T, Lu J, Huang J, He J, McCouch SR, Shen Y, Kai Z, Purugganan MD, Shi S, Wu CI (2007)Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. (2007) PloS Genet. 2006 Nov 17; 2(11):e199 LINK

Book Sections:
Iyer-Pascuzzi A, Sweeney M, Sarla N, McCouch SR (2007) Use of naturally occurring alleles for crop improvement. In: Upadhyaya NM, ed. Rice Functional Genomics: Challenges, Progress and Prospects, pps 107-147 LINK

Edwards J, McCouch S (2007) Molecular markers for use in plant molecular breeding and germplasm evaluation. In: Guimaraes E, Ruane J, Scherf B, Sonnino A, Dargie J (eds) Marker-Assisted Selection: Current status and future perspectives in crops, livestock, forestry and fish. FAO, Rome, pp 29-49 LINK

Proceedings:

McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Moncada P, Xiao J, Coburn J, Fraker E, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, Yuan LP, Ahn S-N (2005) Identification and transfer of trait-enhancing alleles from wild species. In: Brar DS, Mackill DJ, Hardy B (eds) Rice Genetics V: Proceedings of the Fifth International Rice Genetics Symposium, 19-23 November 2005. World Scientific Publishing and International Rice Research Institute, Manila, Philippines, pp 209-232 (not available online)

*Reprints on this list that do not download can be requested from Dr. McCouch by contacting Lois Swales.

NOTE:
“LINK” is arranged so that Cornell researchers can access the article from both inside and outside Cornell .