Useful Research Websites*

• Rice SNP (OryzaSNP) Browser: http://irfgc.irri.org/cgi-bin/gbrowse/oryzasnp10/
  • Click here to find more search options in OryzaSNP database. (Info submitted by Chih-Wei Tung)
• Gramene
  http://www.gramene.org/
  Suitable for genomic and EST information, protein structure and function analysis.  Helpful in finding the genetic and physical map, QTL localization.

• Rice Genome Resource Center
  http://www.rgrc.dna.affrc.go.jp/index.html.en
  Provides access to the following biological materials:
  
• Rice insertion mutant lines (Tos17)
  
• Materials for genetic analysis
  
• Rice full-length cDNA clones

• PLACE (A database for Plant Cis-Acting Regulating DNA Elements)
  http://www.dna.affrc.go.jp/PLACE/

• KOME (Knowledge Based Oryza Molecular biological Encyclopedia)
  http://cdna01.dna.affrc.go.jp/cDNA/
  Provides information on 32,127 full-length cDNA clones from japonica rice.

• Primer3: WWW primer tool
  http://biotools.umassmed.edu/bioapps/primer3_www.cgi
  Primer design software

• NEBcutter V2.0
  http://tools.neb.com/NEBcutter2/index.php
  DNA sequence tool to find large, non-overlapping, open reading frames and sites for all restriction enzymes-from New England BioLabs-(verbage is exactly from their site)

*NOTE: Thanks to Wricha Tyagi for sharing these URLs. If you, as a lab member, have other websites that could be useful to our group, please send them by email to Lois (las52 AT cornell.edu) for inclusion here.